Web Directory

» Argo
   Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
   http://www.broad.mit.edu/annotation/argo/

» BioKin, Ltd.
   Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
   http://www.biokin.com/

» Bioinformatics Software
   Provides details of a number of molecular biology tools, some of which are freeware.
   http://www.dnabaser.com/download/download.html

» Blue Tractor Software
   Java based commercial software for DNA and Protein sequence analysis. Demo available.
   http://www.bluetractorsoftware.co.uk

» DNA Sequencing Software
   software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
   http://www.nucleics.com/DNA_sequencing_tools/DNA_sequencing_tools.html

» DoMix Scientific Software
   Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
   http://science.do-mix.de/index.php

» EnzymeX
   Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
   http://www.mekentosj.com/enzymex/

» FinchTV
   Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux and Solaris. Uses QT library.
   http://www.geospiza.com/finchtv/

» GenoLogics
   Develops data management software solutions for life sciences research. Products include tools for genomics, proteomics, biorepositories, multiple laboratories, systems biology and translational research.
   http://www.genologics.com/

» Insilico Biotechnology
   Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
   http://www.insilico-biotechnology.com/

» JaMBW
   Java based biologist's workbench by Luca I.G.Toldo.
   http://www.bioinformatics.org/JaMBW/

» Ludesi
   Analysis software and service for 2D electrophoresis gels as tools for multivariate statistical analysis.
   http://www.ludesi.com

» MacVector
   Macintosh software which provide sequence editing, primer design, database searching, protein analysis, alignment, phylogeny, and other functions.
   http://www.macvector.com

» Mekentosj software
   Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
   http://www.mekentosj.com/programs/

» Molecular Biology Software Links
   Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
   http://www.yk.rim.or.jp/~aisoai/soft.html

» PeakTrace Basecaller
   A new base caller for ABI DNA sequencers including the 377, 3700, 310, 3100, 3130 and 3730 models. Provides increases in read length of 20 to 100%.
   https://www.nucleics.com/peaktrace/

» Phenosystems
   Offers the Gensearch software to locate and analyse potential mutation locations.
   http://www.phenosystems.com

» SoftZymics
   Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.
   http://www.softzymics.com/

» StarBiochem
   StarBiochem is an application that displays molecules from the Protein Data Bank. It allows users to explore fundamental biological research concepts, select parts of the molecule and control how the selected parts are displayed.
   http://web.mit.edu/star/biochem/