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Top: Science: Biology: Genetics: Software: Quantitative_Genetics:

Quantitative Genetics (28)

Sites:

http://uncronopio.org/ASReml   » ASReml Cookbook Open in a new browser window
   Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis.
   http://uncronopio.org/ASReml

http://www.zod.wau.nl/abg/hs/links/software.html   » Animal Breeding & Genetics, Wageningen Open in a new browser window
   Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN.
   http://www.zod.wau.nl/abg/hs/links/software.html

http://www.bigbenchsoftware.com/   » Big Bench Software Open in a new browser window
   Commercial software for the management of transgenic mouse colonies. Windows and Mac OS X. Demo version available.
   http://www.bigbenchsoftware.com/

http://www.circusoft.com/content/product/1/   » CircuSoft Instrumentation LLC Open in a new browser window
   Transgenic mouse colony tracking and management software for the Mac and Windows. Includes demo software and manuals.
   http://www.circusoft.com/content/product/1/

http://www-personal.une.edu.au/~bkinghor/desire.htm   » DESIRE Open in a new browser window
   Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
   http://www-personal.une.edu.au/~bkinghor/desire.htm

http://agbu.une.edu.au/~kmeyer/dfreml.html   » DFREML Open in a new browser window
   Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
   http://agbu.une.edu.au/~kmeyer/dfreml.html

http://nitro.biosci.arizona.edu/zbook/general/gened.html   » DRIFT Open in a new browser window
   Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
   http://nitro.biosci.arizona.edu/zbook/general/gened.html

http://www.metla.fi/info/vlib/forestgen/software.htm   » Finnish Forest Genetics and Tree Breeding Open in a new browser window
   Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
   http://www.metla.fi/info/vlib/forestgen/software.htm

http://www.geneflowinc.com/   » GeneFlow Inc Open in a new browser window
   This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
   http://www.geneflowinc.com/

http://www.nslij-genetics.org/soft/   » Genetic Analysis Software Open in a new browser window
   Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
   http://www.nslij-genetics.org/soft/

http://www.umsl.edu/~biology/Dyer/GeneticStudio/   » GeneticStudio Open in a new browser window
   A complete suite of population genetic analysis programs for Mac. Includes plug-in modules. Not updated since 2001.
   http://www.umsl.edu/~biology/Dyer/GeneticStudio/

http://www-personal.une.edu.au/~bkinghor/genup.htm   » Genup Open in a new browser window
   Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
   http://www-personal.une.edu.au/~bkinghor/genup.htm

http://nce.ads.uga.edu/~ignacy/programs.html   » Ignacy Misztal Open in a new browser window
   Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
   http://nce.ads.uga.edu/~ignacy/programs.html

http://www.hgu.mrc.ac.uk/Softdata/Lams/   » LAMS Open in a new browser window
   Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
   http://www.hgu.mrc.ac.uk/Softdata/Lams/

http://www.dpw.wau.nl/pv/   » Laboratory of Plant Breeding, Wageningen Open in a new browser window
   Offers free downloadable genetics and plant breeding related software.
   http://www.dpw.wau.nl/pv/

http://www.locustechnology.com/   » Locus Technology, Inc Open in a new browser window
   Colony management, supports creation and tracking of research animals and for transgenic and congenic lines, knockouts and outbred strains.
   http://www.locustechnology.com/

http://www.bio.unc.edu/faculty/vision/lab/mappop/   » MapPop Open in a new browser window
   Software for selective mapping and bin mapping. Windows version, documentation and references are available for download.
   http://www.bio.unc.edu/faculty/vision/lab/mappop/

http://abri.une.edu.au   » PIGBLUP and BREEDPLAN Open in a new browser window
   Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP software for genetic selection of swine and beef cattle. Little information is on this site, so ABRI would have to be contacted.
   http://abri.une.edu.au

http://www-personal.une.edu.au/~bkinghor/pedigree.htm   » Pedigree Viewer Open in a new browser window
   Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program.
   http://www-personal.une.edu.au/~bkinghor/pedigree.htm

http://cc.oulu.fi/~jaspi/popgen/popgen.htm   » PopGen Open in a new browser window
   Software that models population genetics with emphasis on genetic drift, selection, and migration. Windows 95.
   http://cc.oulu.fi/~jaspi/popgen/popgen.htm

http://statgen.ncsu.edu/powermarker/   » PowerMarker Open in a new browser window
   Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows.
   http://statgen.ncsu.edu/powermarker/

http://www.progeny2000.com   » Progeny Software Open in a new browser window
   Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
   http://www.progeny2000.com

http://nitro.biosci.arizona.edu/zbook/book.html   » Quantitative Genetics Resources Open in a new browser window
   List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics.
   http://nitro.biosci.arizona.edu/zbook/book.html

http://www.rqtl.org   » R/qtl: A QTL Mapping Environment Open in a new browser window
   Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
   http://www.rqtl.org

http://www.biomath.medsch.ucla.edu/faculty/klange/software.html   » Statistical Genetics Software Open in a new browser window
   Collection of primarily Fortan 77 programs for genetic analysis. Requires registration to download. Site not updated since 1999.
   http://www.biomath.medsch.ucla.edu/faculty/klange/software.html

http://taxonomy.delrieu.org   » Taxonomy 3 Open in a new browser window
   A package of SAS macros for target discovery, detection of subphenotype and genetic heterogeneity. Can use an unlimited numbers of markers in a single multivariate analysis.
   http://taxonomy.delrieu.org

http://www.mbfs.com/compuped/   » The CompuPed 4.0 Pedigree Program Open in a new browser window
   Extended and reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online.
   http://www.mbfs.com/compuped/

http://www.tzv.fal.de/~eg/   » VCE Open in a new browser window
   Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here.
   http://www.tzv.fal.de/~eg/


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Last Updated: 2006-09-30 08:04:12


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