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Top: Science: Biology: Genetics: Software:

Software (53)

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Sites:

http://www.alicesoftware.com/   » Alice Software Open in a new browser window
   Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
   http://www.alicesoftware.com/

http://es.embnet.org/~mwang/assp.html   » Alternative Splice Site Predictor Open in a new browser window
   ASSP predicts putative alternative exon isoform, cryptic, and constitutive splice sites of internal (coding) exons.
   http://es.embnet.org/~mwang/assp.html

http://www.bioconstructor.com   » BioConstructor Molecular Cloning Software Open in a new browser window
   BioConstructor is a bioinformatics solution focussing on molecular cloning. Runs on Windows, Mac OS X, Linux.
   http://www.bioconstructor.com

http://www.broad.mit.edu/tools/software.html   » Broad Institute Genetics Software Open in a new browser window
   Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection.
   http://www.broad.mit.edu/tools/software.html

http://creme.dcode.org/   » CREME: Cis-REgulatory Module Explorer Open in a new browser window
   Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments.
   http://creme.dcode.org/

http://www.nucleics.com/DNA_sequencing_tools/DNA-sequencing-software-countertrace.html   » CounterTrace II DNA Sequencing Open in a new browser window
   Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer.
   http://www.nucleics.com/DNA_sequencing_tools/DNA-sequencing-software-countertrace.html

http://www.dnabaser.com/download/FASTA-Converter/index.html   » Free FASTA/MultiFASTA converter tool Open in a new browser window
   This tool will look for all FASTA files in the specified folder and will merge their content in a single file, generating a standard or custom MultiFASTA file. Just download the program and double click to run it. It does not need additional software/add-
   http://www.dnabaser.com/download/FASTA-Converter/index.html

http://gentle.magnusmanske.de/   » GENtle Open in a new browser window
   GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).
   http://gentle.magnusmanske.de/

http://www.medinfopoli.polimi.it/GAAS/   » Gene Array Analyzer Software Open in a new browser window
   Software for the efficient management, analysis and visualization of large amounts of gene expression data.
   http://www.medinfopoli.polimi.it/GAAS/

https://biostat.virginia.edu/geoss/site/   » Gene Expression Open Source System Open in a new browser window
   Open source database and analysis package used to archive and analyze expression data from gene chip experiments. Includes microarray center workflow management, and researcher tools to analyze final data.
   https://biostat.virginia.edu/geoss/site/

http://www.genesifter.net/web/   » GeneSifter Open in a new browser window
   Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format.
   http://www.genesifter.net/web/

http://linkage.rockefeller.edu/   » Genetic Linkage Analysis Open in a new browser window
   Offers links and other resources for genetic analysis software from the Rockefeller University.
   http://linkage.rockefeller.edu/

http://www.bio.davidson.edu/courses/genomics/mirror/Urchin/u0maps.htm   » Genetic Network Maps as Java Applets Open in a new browser window
   Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
   http://www.bio.davidson.edu/courses/genomics/mirror/Urchin/u0maps.htm

http://genex.sourceforge.net/   » Genex Open Source Gene Expression Database Open in a new browser window
   Genex is an open source database for storing, processing, and analyzing gene expression microarray data.It is intended for local installation by medium sized laboratories with some system administration support. No activity since 2003.
   http://genex.sourceforge.net/

http://www.handsongenetics.com   » Hands on Genetics Open in a new browser window
   Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows.
   http://www.handsongenetics.com

http://www.emboss.co.nz/products.php?pid=2   » MapMakerDrawer Open in a new browser window
   Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.
   http://www.emboss.co.nz/products.php?pid=2

http://www.hgu.mrc.ac.uk/Softdata/Mustar/   » MuStaR Sequence Variant Database Software Open in a new browser window
   Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained.
   http://www.hgu.mrc.ac.uk/Softdata/Mustar/

http://www.softgenetics.com/mutationExplorer.html   » Mutation Explorer Open in a new browser window
   Software to automatically detect mutations from DNA sequence data, including homozygous, heterozygous, insertion and deletion.
   http://www.softgenetics.com/mutationExplorer.html

http://www.bioinformatics.ubc.ca/pegasys/   » Pegasys Open in a new browser window
   Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions.
   http://www.bioinformatics.ubc.ca/pegasys/

http://allometra.com/   » PyMoods Open in a new browser window
   A software application for visualizing genomic data. Can be used to analyze and display relations between complete genomes, genomic fragments, proteins, ESTs, full length cDNAs, and gene expression data.
   http://allometra.com/

http://www.vgl.ucdavis.edu/STRand   » STRand Open in a new browser window
   Open-source Windows program to automate or speed up the analysis of DNA fragment length polymorphism samples run on ABI3730, 3700 and 377 sequencers. Instructions for use and program download available.
   http://www.vgl.ucdavis.edu/STRand

http://www.ananomouse.com/products/synopsis.asp   » Synopsis Open in a new browser window
   Commercial Windows software for visualization and annotation of genomic data.
   http://www.ananomouse.com/products/synopsis.asp

http://www.tagsorter.com   » TagSorter Open in a new browser window
   Database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences.
   http://www.tagsorter.com

http://corba.ebi.ac.uk/Biocatalog/   » The BioCatalog Open in a new browser window
   Software directory of general interest in molecular biology and genetics. Not updated since 2000.
   http://corba.ebi.ac.uk/Biocatalog/

http://bioinformatics.org/sms2/   » The Sequence Manipulation Suite Open in a new browser window
   The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
   http://bioinformatics.org/sms2/


Category Editor: illdiletantte

Last Updated: 2006-08-27 00:52:48


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