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Top: Science: Biology: Bioinformatics: Software: Software_Development:

Software Development (28)

See Also:
Editor's Picks:

http://www.bioperl.org   » Bioperl.org Open in a new browser window
   The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
   http://www.bioperl.org


Sites:

http://www.acedb.org/   » AceDB Open in a new browser window
   A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
   http://www.acedb.org/

http://stein.cshl.org/AcePerl/   » AcePerl Open in a new browser window
   OO Interface to AceDB
   http://stein.cshl.org/AcePerl/

http://www.bsml.org/   » BSML Open in a new browser window
   Bioinformation Sequence Markup Language. Extensible language specification and container for bioinformatic data.
   http://www.bsml.org/

http://bibiserv.techfak.uni-bielefeld.de/   » Bielefeld University Bioinformatics Server Open in a new browser window
   BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
   http://bibiserv.techfak.uni-bielefeld.de/

http://biojava.org/   » BioJava.org Open in a new browser window
   The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
   http://biojava.org/

http://nostoc.stanford.edu/Docs/   » BioLisp.org Open in a new browser window
   BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
   http://nostoc.stanford.edu/Docs/

http://www.biophp.org   » BioPHP Open in a new browser window
   An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
   http://www.biophp.org

http://biopython.org/   » BioPython Open in a new browser window
   The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
   http://biopython.org/

http://www.bioquery.org/   » BioQuery Open in a new browser window
   Tools that searches multiple biomedical databases from your desktop.
   http://www.bioquery.org/

http://bioruby.org   » BioRuby Open in a new browser window
   BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
   http://bioruby.org

http://www.bioinf.uni-sb.de/OK/BALL/   » Biochemical Algorithms Library Open in a new browser window
   C++ framework for rapid software prototyping in molecular modeling.
   http://www.bioinf.uni-sb.de/OK/BALL/

http://www.bioconductor.org/   » Bionconductor Open in a new browser window
   The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
   http://www.bioconductor.org/

http://www.broad.mit.edu/genome_software/other/boulder.html   » Boulder.pm Open in a new browser window
   Simple but powerful data exchange language, suitable for serializing biological data objects.
   http://www.broad.mit.edu/genome_software/other/boulder.html

http://www.ebi.ac.uk/Dynamite/   » Dynamite Open in a new browser window
   Code generator for writing dynamic programming programs.
   http://www.ebi.ac.uk/Dynamite/

http://www.melogen.upv.es/genomica/web_estpipe/index.php   » EST2uni Open in a new browser window
   A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
   http://www.melogen.upv.es/genomica/web_estpipe/index.php

http://www.htstools.com/   » High Throughput Screening Tools Open in a new browser window
   Analytical tools and SQL scripts that solve common problems in drug discovery.
   http://www.htstools.com/

http://www.intermine.org   » InterMine Open in a new browser window
   InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
   http://www.intermine.org

http://www-ra.informatik.uni-tuebingen.de/software/JCell/   » JCell Open in a new browser window
   A Java based framework to reconstruct genetic interactions from microarray data.
   http://www-ra.informatik.uni-tuebingen.de/software/JCell/

http://www.moltalk.org/   » MolTalk Open in a new browser window
   Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.
   http://www.moltalk.org/

http://ncicb.nci.nih.gov/NCICB/infrastructure   » NCICB Core Infrastructure Open in a new browser window
   The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
   http://ncicb.nci.nih.gov/NCICB/infrastructure

http://neobio.sourceforge.net   » NeoBio Open in a new browser window
   An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.
   http://neobio.sourceforge.net

http://www.pasteur.fr/recherche/unites/sis/Pise/   » PISE Open in a new browser window
   Given an abstract definition of a program's parameters, PISE can generate whatever style of interface from the configuration module.
   http://www.pasteur.fr/recherche/unites/sis/Pise/

http://www.cebl.auckland.ac.nz/pal-project/   » Phylogenetic Analysis Library Open in a new browser window
   PAL library is a Java toolkit for determining evolutionary trends.
   http://www.cebl.auckland.ac.nz/pal-project/

http://bioinformatics.org/jSight/   » Sight Open in a new browser window
   Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, s
   http://bioinformatics.org/jSight/

http://www.inf.ethz.ch/personal/gonnet/DarwinManual/DarwinManual.html   » The Darwin Manual Open in a new browser window
   Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
   http://www.inf.ethz.ch/personal/gonnet/DarwinManual/DarwinManual.html

http://cgr.harvard.edu/cbg/scriptome/   » The Scriptome Open in a new browser window
   A set of software tools that filter, format, and merge data in tabular or common biological formats. Organized as a classified collection of Perl one-liners.
   http://cgr.harvard.edu/cbg/scriptome/

http://www.ebi.ac.uk/xembl/   » The XEMBL Project Open in a new browser window
   XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.
   http://www.ebi.ac.uk/xembl/


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Last Updated: 2006-04-09 22:23:56


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